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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74427758_74431407_F

Intron Information:

Intron Rank:
133583
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
74427758 - 74431407
Intron Length:
3650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTGCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATATATAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
56.7
0.15
1.2
56
43.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
52.8
0.17
1.9
76.5
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024854
74427552 - 74444032
16481