About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74433390_74433507_F

Intron Information:

Intron Rank:
133581
Intron Class:
major
Intron Phase:
Intron Coordinates:
74433390 - 74433507
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020619
74431081 - 74437900
6820
ENSAPLT00000041356
74431081 - 74455307
24227