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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74433557_74437614_F

Intron Information:

Intron Rank:
133582
Intron Class:
major
Intron Phase:
Intron Coordinates:
74433557 - 74437614
Intron Length:
4058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
TTTGCTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTCTATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.6
0.69
0.9
74.6
34.9
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
53.1
0.17
1.7
73.98
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020619
74431081 - 74437900
6820