About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74433557_74442884_F

Intron Information:

Intron Rank:
133578
Intron Class:
major
Intron Phase:
Intron Coordinates:
74433557 - 74442884
Intron Length:
9328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
ACATTTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CATTTTTTATAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78
0.63
0.8
72.8
36.7
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
48.4
-0.2
1.7
52.81
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024854
74427552 - 74444032
16481
ENSAPLT00000019171
74431081 - 74444032
12952