About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74433557_74455226_F

Intron Information:

Intron Rank:
133593
Intron Class:
major
Intron Phase:
Intron Coordinates:
74433557 - 74455226
Intron Length:
21670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CTTGATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TGTTACTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
82.4
0.73
0.9
75.8
37.8
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
71.1
0.75
1.4
85.09
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041356
74431081 - 74455307
24227