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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74436147_74437614_F

Intron Information:

Intron Rank:
133590
Intron Class:
major
Intron Phase:
Intron Coordinates:
74436147 - 74437614
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTCTATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
80.6
0.69
0.9
74.6
34.9
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
53.1
0.17
1.7
73.98
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030589
74435106 - 74437900
2795