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Intron Name: Anas_platyrhynchos_platyrhynchos_3_7443692_7444776_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

7443692 - 7444776

Intron Length:

1085

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTTACCTAC

5'SS Class:

weak_major

3'SS Sequence:

ACTGGTACAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGGTGAA

U12 Branch Point Sequence:

TGCTGGTGAAAA

Flanking Amino Acid:

QPDLMDALRVWAAFVCKTVF

Intron Amino Acid Position:

432

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.9

0.05

1.4

54.4

39.7

Major BPS

56.9

0.17

1.3

49.1

46.3

Major PPT

49.1

-0

1.1

46.6

Minor 5ss

48.5

-0.1

2.6

64.9

39.8

Minor BPS

41.1

-0.6

2.4

54.08

44.1

Associated Gene:

Gene:

NPHP1

Ensembl Gene ID:

ENSAPLG00000010863

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011382

7441778 - 7456887

15110