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Intron Name: Anas_platyrhynchos_platyrhynchos_3_7444855_7447015_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7444855 - 7447015

Intron Length:

2161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTGTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

TTAGCCTTAAAT

Flanking Amino Acid:

LKDRINMQSADLICNPILAT

Intron Amino Acid Position:

406

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

0.5

1.1

76.9

32.8

Major PPT

84.1

0.77

0.8

76.4

37.7

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

74.2

0.84

1.5

86.4

39.1

Associated Gene:

Gene:

NPHP1

Ensembl Gene ID:

ENSAPLG00000010863

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038743

7441778 - 7457511

15734

ENSAPLT00000017368

7441778 - 7457511

15734

ENSAPLT00000011382

7441778 - 7456887

15110