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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7447129_7447535_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7447129 - 7447535
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
SLSTQSKDILNLLPETLIGS
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.1
0.63
0.8
75.2
28.7
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
NPHP1
Ensembl Gene ID:
ENSAPLG00000010863
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038743
7441778 - 7457511
15734
ENSAPLT00000017368
7441778 - 7457511
15734
ENSAPLT00000011382
7441778 - 7456887
15110