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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7448465_7449306_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7448465 - 7449306
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTATTCTAACC
Flanking Amino Acid:
FTSDGMPVPSKMYELPLNGG
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
85.1
0.79
0.7
80
25.5
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
61.4
0.34
1.7
75.33
34.8

Associated Gene:

Gene:
NPHP1
Ensembl Gene ID:
ENSAPLG00000010863
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038743
7441778 - 7457511
15734
ENSAPLT00000017368
7441778 - 7457511
15734
ENSAPLT00000011382
7441778 - 7456887
15110