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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74493678_74493852_F

Intron Information:

Intron Rank:
126141
Intron Class:
major
Intron Phase:
Intron Coordinates:
74493678 - 74493852
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTGG
5'SS Class:
major
3'SS Sequence:
AATCTTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.5
43.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.4
0.57
0.9
69.2
36
Minor 5ss
42
-0.9
2.4
50.4
45.9
Minor BPS
49.7
0.06
2
74.97
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017959
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028769
74478767 - 74494060
15294