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Intron Name: Anas_platyrhynchos_platyrhynchos_3_7451670_7452826_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7451670 - 7452826

Intron Length:

1157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

GTCATGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

TTTTTCCCCACT

Flanking Amino Acid:

VRLCLFDGNRVLSNIHTVRA

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

66.6

39.6

Major BPS

72.5

0.56

1.2

39.9

Major PPT

72.4

0.51

0.9

69.2

41.7

Minor 5ss

27.1

-2.6

26.2

36.9

Minor BPS

49.3

0.03

2.3

80.59

41.2

Associated Gene:

Gene:

NPHP1

Ensembl Gene ID:

ENSAPLG00000010863

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011382

7441778 - 7456887

15110

ENSAPLT00000038743

7441778 - 7457511

15734

ENSAPLT00000017368

7441778 - 7457511

15734