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Intron Name: Anas_platyrhynchos_platyrhynchos_3_7453827_7454509_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7453827 - 7454509

Intron Length:

683

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TAATGTATTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTGTTTTTAAAT

Flanking Amino Acid:

LSTLFQLLEEGNQFRASYFL

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

90.4

0.7

90.2

19.3

Major PPT

69.6

0.44

63.4

42.3

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

72.8

0.79

1.3

84.4

36.4

Associated Gene:

Gene:

NPHP1

Ensembl Gene ID:

ENSAPLG00000010863

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038743

7441778 - 7457511

15734

ENSAPLT00000017368

7441778 - 7457511

15734

ENSAPLT00000011382

7441778 - 7456887

15110