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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7454595_7456267_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7454595 - 7456267
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGTTAA
5'SS Class:
major
3'SS Sequence:
TGTTTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTATTAACA
Flanking Amino Acid:
SVRVSPLLLYNDTVEVLATM
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
74.9
30.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
78.5
0.64
1
74.2
39.4
Minor 5ss
48
-0.2
2.5
61.7
43.4
Minor BPS
72.4
0.7
1.5
81.25
33.5

Associated Gene:

Gene:
NPHP1
Ensembl Gene ID:
ENSAPLG00000010863
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038743
7441778 - 7457511
15734