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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7456421_7456731_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7456421 - 7456731
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCGGCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTGTCTCCATCT
Flanking Amino Acid:
AQQEGDLTFKKGEVLLIHDK
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
50.8
0.02
1.1
50.4
31.7
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
47.7
-0.1
2.1
72.77
44.2

Associated Gene:

Gene:
NPHP1
Ensembl Gene ID:
ENSAPLG00000010863
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011382
7441778 - 7456887
15110