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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7460003_7460093_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7460003 - 7460093
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGCT
5'SS Class:
major
3'SS Sequence:
CCCTCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCCAC
U12 Branch Point Sequence:
ACCCACCGACCT
Flanking Amino Acid:
MAEAASEELLLAAAFVS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
64.1
39.3
Major BPS
46.9
-0.1
1.1
53.7
32.6
Major PPT
73.9
0.54
0.7
67.7
25.9
Minor 5ss
36
-1.6
3.9
56.2
48.2
Minor BPS
37.9
-0.8
1.9
50.53
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255