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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7460177_7461479_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7460177 - 7461479
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTTTCTACA
Flanking Amino Acid:
IPFKTSPQAVRLYYLYNHWI
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
95.8
1.03
0.5
92
19.1
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
57.1
0.22
1.8
74.8
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255