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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74615252_74615348_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74615252 - 74615348
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCCGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
GGCTCCTGAAGA
Flanking Amino Acid:
EAISDLPGGQIFYRALRDVQ
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63
0.31
1.3
49.1
47.6
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
74.7
0.56
0.7
65.8
30.2
Minor 5ss
42.7
-0.8
3.2
60.2
44.3
Minor BPS
53.6
0.11
1.8
61.92
43.7

Associated Gene:

Gene:
PRDM13
Ensembl Gene ID:
ENSAPLG00000027679
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032177
74611022 - 74617121
6100