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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74618680_74618812_R

Intron Information:

Intron Rank:
151936
Intron Class:
major
Intron Phase:
Intron Coordinates:
74618680 - 74618812
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGAAATTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTGCTTTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
71.4
40.3
Major BPS
74.8
0.62
1
67
39.8
Major PPT
61.6
0.26
1
59.8
45.4
Minor 5ss
30
-2.3
3.1
41.6
45
Minor BPS
64.3
0.44
1.5
75.09
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020929
74617692 - 74619248
1557