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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74629096_74632790_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74629096 - 74632790
Intron Length:
3695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATTG
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
YWKLQIFFTNVIQALGEHLK
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.6
38.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.9
0.65
1
83.8
31.4
Minor 5ss
41
-1
3.2
52.7
45.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
CCNC
Ensembl Gene ID:
ENSAPLG00000007635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007927
74628615 - 74645374
16760