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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74632876_74633111_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74632876 - 74633111
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTG
5'SS Class:
major
3'SS Sequence:
TATAACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGTTATAACA
Flanking Amino Acid:
ATVYFKRFYARYSLKSIDPV
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.4
45.1
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
72.5
0.51
1
67.5
42.9
Minor 5ss
34.2
-1.8
3.5
46.9
48.4
Minor BPS
61
0.34
1.7
75.35
36.3

Associated Gene:

Gene:
CCNC
Ensembl Gene ID:
ENSAPLG00000007635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007927
74628615 - 74645374
16760