About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74634685_74637443_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74634685 - 74637443
Intron Length:
2759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTACTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCACTTTTAACA
Flanking Amino Acid:
TRLISAATSVLKTRFSYAFP
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.5
0.73
0.7
78.5
28.7
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
66.6
0.52
1.2
68.92
37.5

Associated Gene:

Gene:
CCNC
Ensembl Gene ID:
ENSAPLG00000007635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007927
74628615 - 74645374
16760