About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74637500_74638810_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74637500 - 74638810
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TACTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGCTGTTTAATT
Flanking Amino Acid:
PKEFPYRMNHILECEFYLLE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
83.1
0.75
0.8
77.3
31
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
62.1
0.46
1.8
75.88
41.7

Associated Gene:

Gene:
CCNC
Ensembl Gene ID:
ENSAPLG00000007635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007927
74628615 - 74645374
16760