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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7464180_7465418_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7464180 - 7465418
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATG
5'SS Class:
major
3'SS Sequence:
CTGTCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGCTCAGCAAGT
Flanking Amino Acid:
LVTTANSPDVMMPAFDFSSW
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.5
38.6
Major BPS
80
0.75
1
78.6
31
Major PPT
76.3
0.59
0.8
74.1
31
Minor 5ss
47.9
-0.2
2.5
64.1
40.5
Minor BPS
40.6
-0.6
2.5
61.98
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255