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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74643409_74644061_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74643409 - 74644061
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
GTCTTCCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTCTTCCTAACA
Flanking Amino Acid:
KMPKPKPPPNSEGEQGPNGS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.8
0.56
0.9
69.8
35.4
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
63.2
0.41
1.7
72.44
39.4

Associated Gene:

Gene:
CCNC
Ensembl Gene ID:
ENSAPLG00000007635
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007927
74628615 - 74645374
16760