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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74649528_74649743_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
74649528 - 74649743
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTAAGCTGT
5'SS Class:
weak_major
3'SS Sequence:
ATTTATTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
GKIPASINIPLKELVEALQM
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.4
60.6
46.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.2
0.72
0.8
76.6
36.6
Minor 5ss
46.5
-0.4
2.9
60
44.9
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006518
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020904
74646823 - 74650411
3589
ENSAPLT00000006764
74648000 - 74651786
3787