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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74663548_74665144_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74663548 - 74665144
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTCCTTATTG
Flanking Amino Acid:
IWLCLKCGSQGCSKNSEGQH
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
83.4
0.75
0.7
81.8
28.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
74.6
0.63
1.6
79.24
37.7

Associated Gene:

Gene:
USP45
Ensembl Gene ID:
ENSAPLG00000007229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007555
74660896 - 74707715
46820