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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7466739_7467276_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7466739 - 7467276
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
CTATCCTTTACT
Flanking Amino Acid:
ISDDEQKGFIDKKSFVQLAD
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
82.4
0.73
0.8
77.4
29.7
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
73.4
0.82
1.6
85.07
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255