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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74675014_74676289_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74675014 - 74676289
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATTAG
U12 Branch Point Sequence:
TTTTTCTTTAAG
Flanking Amino Acid:
NTCFFNAVMQNLAQTHILNE
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
44.8
-0.3
1.6
37.5
41.8
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
62.2
0.24
1.8
72.26
40.2

Associated Gene:

Gene:
USP45
Ensembl Gene ID:
ENSAPLG00000007229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007555
74660896 - 74707715
46820