About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74676386_74678560_F


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
74676386 - 74678560

Intron Length:
2175

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTAAGTGTG

5'SS Class:
strong_major

3'SS Sequence:
CTTTGCTTTGAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAA

U12 Branch Point Sequence:
TTTGCTTTGAAG

Flanking Amino Acid:
KICHTSDSQLDPLVVNLSSP

Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.1
0.9
0.9
77.9
36.8

Major BPS
87.2
0.92
0.8
77.7
37.1

Major PPT
74.6
0.55
1
75.1
33.6

Minor 5ss
36.4
-1.5
3.3
46.1
43.6

Minor BPS
59.9
0.17
1.6
67.24
40.8

Associated Gene:

Gene:
USP45

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

74660896 - 74707715
46820