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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74678692_74691211_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74678692 - 74691211
Intron Length:
12520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTCCTTACTG
Flanking Amino Acid:
PKVLFSQLCQKAPRFKGFQQ
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.9
0.7
0.8
75.3
33.1
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
64.7
0.32
1.7
66.95
41

Associated Gene:

Gene:
USP45
Ensembl Gene ID:
ENSAPLG00000007229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007555
74660896 - 74707715
46820