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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74696241_74698354_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74696241 - 74698354
Intron Length:
2114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGCATTTAATA
Flanking Amino Acid:
STVMCEECENISTVKEPFID
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
83.8
34.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.3
0.68
1
79.3
33.1
Minor 5ss
42.7
-0.8
3.2
64
40.7
Minor BPS
61.8
0.37
1.5
69.55
37

Associated Gene:

Gene:
USP45
Ensembl Gene ID:
ENSAPLG00000007229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007555
74660896 - 74707715
46820