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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74699574_74702802_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74699574 - 74702802
Intron Length:
3229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
CCATCATTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTCCTAAATT
Flanking Amino Acid:
VKKHTLTKDKNQLNQERRLA
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.7
0.58
0.9
68.5
36.1
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
74.7
0.85
1.6
88.65
36.5

Associated Gene:

Gene:
USP45
Ensembl Gene ID:
ENSAPLG00000007229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007555
74660896 - 74707715
46820