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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74703236_74703382_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74703236 - 74703382
Intron Length:
147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTATCGA
5'SS Class:
major
3'SS Sequence:
TTTACCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
CTGCCTTTACCA
Flanking Amino Acid:
EDEKSSRGDSELLMGNNKLL
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.2
56
42.6
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
79.4
0.66
0.8
74.4
30.6
Minor 5ss
35.4
-1.7
2.7
42.4
44.2
Minor BPS
56
0.18
1.7
64.04
42.8

Associated Gene:

Gene:
USP45
Ensembl Gene ID:
ENSAPLG00000007229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007555
74660896 - 74707715
46820