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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7470400_7470964_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7470400 - 7470964
Intron Length:
565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCACTGGAGA
Flanking Amino Acid:
TMLTFGGLTLVVYCIFAIIG
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
87.4
0.84
0.7
80.6
31.4
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
43
-0.5
1.9
50.56
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255