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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7471180_7471450_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7471180 - 7471450
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCACGATAT
5'SS Class:
major
3'SS Sequence:
TACTCTTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTATCCTTAACT
Flanking Amino Acid:
VLMELTVVNQCGFANVTAQP
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
61.5
39.8
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
74.7
0.56
1
69
41.6
Minor 5ss
28.4
-2.5
4.2
43.5
46.1
Minor BPS
94.1
1.46
0.7
101.3
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255