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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7471532_7471822_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7471532 - 7471822
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
TTCTGCTTATTT
Flanking Amino Acid:
FHIVMVIIIVNIFVSFILEA
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
90.5
0.91
0.7
89.1
27.5
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
58.9
0.36
2
79.24
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255