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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7471937_7472306_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7471937 - 7472306
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
CCTTCTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAC
U12 Branch Point Sequence:
CCTGGGGTAACT
Flanking Amino Acid:
KIQELGMGVQEDVLQDEQLL
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
60.8
44.4
Major BPS
46.7
-0.2
1.4
47.1
44.6
Major PPT
76
0.59
0.9
72.4
32.2
Minor 5ss
43.7
-0.7
3.1
56.5
41.9
Minor BPS
38.1
-0.8
2.8
58.33
50.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011360
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011879
7459982 - 7473236
13255