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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74720217_74723857_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
74720217 - 74723857
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CTATTATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTATTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.6
0.67
0.8
77.9
35.2
Minor 5ss
34.9
-1.7
2.9
52.3
44.3
Minor BPS
62.1
0.46
1.6
76.56
39.8

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750