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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74723968_74725205_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74723968 - 74725205
Intron Length:
1238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTCCTCTATT
Flanking Amino Acid:
MQSFQHQQDPSQIDWAALAQ
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79
0.65
0.8
77.5
29.6
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
62.8
0.48
1.9
82.79
38.2

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750