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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74730403_74730702_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74730403 - 74730702
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
TTTGTTTACGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTATAGAACT
Flanking Amino Acid:
MPVKQEPPQIDAVKRRTLPA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
71.4
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
80.8
0.69
0.9
77.3
36
Minor 5ss
37
-1.5
3.7
54.6
44.9
Minor BPS
56.2
0.27
1.9
83.18
37.2

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750