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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74730894_74731475_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74730894 - 74731475
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GCTCTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTTTCCTGAAAT
Flanking Amino Acid:
GPRLPQKSKFDSDEEEEDAE
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
72.7
38.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
75.6
0.58
0.8
69.6
31.1
Minor 5ss
37.7
-1.4
2.8
48.3
41.7
Minor BPS
78.8
0.98
1.4
94.82
31.3

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750