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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74731614_74732774_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74731614 - 74732774
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTAATG
5'SS Class:
major
3'SS Sequence:
TACTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGGTCTTTAATT
Flanking Amino Acid:
MTEEEKEYQMMVMTKMLLTE
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.1
62.7
41.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.5
0.89
0.7
88.2
28.7
Minor 5ss
43.4
-0.7
2.8
54.6
43.8
Minor BPS
78
0.96
1.1
84.33
36.9

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750