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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74732875_74733573_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
74732875 - 74733573
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
ATGTGATACAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTGTTGTTGATG
Flanking Amino Acid:
AKDVHRKATKAPAKQLAQSS
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
61.5
44.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
50.6
0.02
1.2
49.5
42
Minor 5ss
43.3
-0.7
2.9
55.3
48.9
Minor BPS
46.9
-0.3
2.1
52.73
43.3

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750