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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74733628_74734941_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74733628 - 74734941
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATGCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCCTCGTGATA
Flanking Amino Acid:
SSALASLTGLGGLGGYGSGD
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
82.1
37.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
71.9
0.49
1
66.4
39.7
Minor 5ss
39.8
-1.1
2.8
52.3
44.3
Minor BPS
48.2
-0.1
2
62.63
38.2

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750