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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74735114_74737863_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
74735114 - 74737863
Intron Length:
2750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
CTCTAAATAACT
Flanking Amino Acid:
QQLLLEKTARRRKATN*
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1.1
81.4
32.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
41.6
-0.9
2.6
54
43.3
Minor BPS
48.4
-0
2.1
71.19
45.1

Associated Gene:

Gene:
PNISR
Ensembl Gene ID:
ENSAPLG00000006740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007039
74720133 - 74737882
17750