About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7474233_7474491_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7474233 - 7474491
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCG
5'SS Class:
major
3'SS Sequence:
TTGTCTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAC
U12 Branch Point Sequence:
AAGTGCCTACGG
Flanking Amino Acid:
PRFVGYCLKLAEFISSPCEY
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
62.4
42.4
Major BPS
47.5
-0.1
1.3
44.1
40.5
Major PPT
78
0.63
0.9
73.4
37
Minor 5ss
31.8
-2.1
3.3
37.6
42.5
Minor BPS
36.4
-1.1
2.3
39.17
44.1

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387