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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7474689_7475267_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7474689 - 7475267
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTCTG
5'SS Class:
major
3'SS Sequence:
TCTTGCAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCTTGCAATT
Flanking Amino Acid:
QPRESLEQLYCWLQNYDPQN
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.3
43.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
70
0.45
0.9
67.6
38
Minor 5ss
38
-1.3
3
47.3
42.4
Minor BPS
47.5
-0.1
2.1
72.72
39

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387