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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74760856_74765813_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
74760856 - 74765813
Intron Length:
4958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCTG
5'SS Class:
major
3'SS Sequence:
CTTTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTCTGTTTATTT
Flanking Amino Acid:
YLRMADLPYQNYFDGKLSPQ
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
66.2
45.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.6
0.85
0.6
88.2
21.6
Minor 5ss
36.1
-1.6
3.3
49.6
46.6
Minor BPS
49
0.01
2
67.71
44.1

Associated Gene:

Gene:
FAXC
Ensembl Gene ID:
ENSAPLG00000006456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006685
74760020 - 74778192
18173