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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7476508_7477911_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7476508 - 7477911
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGGC
5'SS Class:
major
3'SS Sequence:
CCCACAACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTCTCCCTACCC
Flanking Amino Acid:
NDPAYTCNNQGSDCAGTQSC
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
64.2
40.9
Major BPS
79
0.72
1
78.4
31.2
Major PPT
60.3
0.23
0.9
55.5
33.8
Minor 5ss
36.3
-1.6
3.4
50.9
45.7
Minor BPS
59.6
0.28
2
75.15
41.6

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387